NEWS

---

graph4lg 1.8.0 (2023-01-30)

-- Major changes

• Removal of diveRsity dependency
• Removal of mat_pw_gst and mat_pw_d_jost
• Update of mat_gen_dist to depend on hierfstat package
• Creation of graphab_interpol function -- Minor changes
• Bug fixed in link_compar

graph4lg 1.6.0 (2022-05-18)

-- Minor changes

• Update of Graphab software download URL
• Copy of graphab-1.8.jar in the sub-directory plugins within graph4lg_jar for using the development versions of Graphab functions.
• Add comments regarding development versions of Graphab functions and potential error when returning metric values already computed previously.

graph4lg 1.5.0

-- Minor changes

• Update of pop_rare_gen_index() for allowing the shell/system command to run on both Linux or Windows OS

graph4lg 1.4.0 (2022-03-08)

-- Major changes:

• Creation of a new genetic data conversion function (genind_to_structure) (internal function for the moment)
• Creation of a function for rarefied genetic diversity indices called pop_rare_gen_index() (internal function for the moment)
• Creation of a new function for computing corridors in a Graphab project
• Addition of a new contributor to the package
• Modification of graphab_project for allowing users to create multi-habitat graph projects
• Modification of graphab_metric for allowing users to compute multi-habitat graph metrics
• Modification of graphab_link for allowing users to include an external cost surface

-- Minor changes:

• Update of Graphab software to 2.8
• Creation of a function checking for multihabitat graph projects
• Modification of functions using ggplot2 to avoid aes_string()
• Update of spatstat versions and package names
• Creation of a git repository on Gitlab

-- Bug fixes:

• Modifications of the way the current directory are managed in graphab-based functions

graph4lg 1.2.0 (2021-03-16)

-- Major changes:

• Creation of 9 new functions linked to Graphab software and internal
• Change of the author email address
• Addition of a CITATION file following the publication of a software paper

-- Minor changes:

• Update of Graphab software to 2.6
• Update of costdist software to 0.4 because of a bug with no data values
• Use of .xml project files for checking arguments
• Update of spatstat versions and package names

-- Bug fixes:

• Reset working directory before stopping when it is changed
• Bug due to unique population in file input of genind_to_genepop
• nb argument in graphab_modul was not active

graph4lg 1.0.1 (2020-09-28)

-- Minor changes:

• RdMacros packages in Imports instead of Suggests
• RAM allocated to computation when using mat_cost_dist is adjustable. And java interface launching is blocked when running this function.

-- Bug fixes:

• Order of commands changed in graphab_metric
• Bug due to st_write() fixed

graph4lg 1.0.0 (2020-07-22)

-- Major changes:

• Creation of functions to use Graphab java software tool (downloaded by users) from R (get_graphab, graphab_project, graphab_link, graphab_graph, graphab_metric, graphab_modul, graphab_pointset, get_graphab_metric, get_graphab_linkset)

• Creation of mat_cost_dist function integrating costDistance from gdistance and another java code (downloaded by users)

• Inclusion of geographical distance calculations from polar coordinates in mat_geo_dist function

• Compatibility with SNPs markers and 2 allele-digits coded microsatellites

• Creation of compute_node_metric and compute_graph_modul integrating options previously included in graph_node_compar and graph_modul_compar, and modification of these two latter functions to integrate the two former

• plot_graph_lg now allows users to change node sizes according to node attribute variables

• Change from proj4string CRS to EPSG when given by users

• Change from rgdal functions to sf functions when the former returned too many warning messages

• Creation of four vignettes instead of one

• Bug fixes: bug fixes in graph_plan, genepop_to_genind and gstud_to_genind

graph4lg 0.5.0 (2020-05-04)

• Minor change: change in package dependencies to stick with CRAN requirements

graph4lg 0.4.0

• Addition of new parameters to gen_graph_topo to allow the construction of k-nearest neighbor graphs
• Removal of a dataset and addition of a new simulated small dataset
• Minor change: modification of function examples to reduce their duration, vignette update, minor changes in functions 'plot_w_hist' and 'scatter_dist_g'
• Bug fixes: modification of pw_mat_to_df function

graph4lg 0.3.0 (2020-03-19)

• Minor change: weight option in graph_plan
• Bug fixes: vignette modification to solve a Debian error

graph4lg 0.2.0 (2019-12-12)

• Addition of several functions (pw_mat_to_df, df_to_pw_mat, graph_to_df, graph_plan, set_AB_prob)
• Changes to replace 'class()' instances by 'inherits()' instances in order to make the package compatible with R 4.0.0.
• Minor changes: spelling errors, code lines length

graph4lg 0.1.1 (2019-07-23)

• Minor changes in the DESCRIPTION file and modifications of the commands writing files in the examples, the vignette and in two functions to conform with CRAN policies.

graph4lg 0.1.0

• Initial release