Introduction | Data used in this vignette | Genetic data loading and format conversions | GENEPOP to genind | genind to GENEPOP | STRUCTURE to genind | gstud to genind | Genetic diversity assessment | Distance calculations | Genetic distances | Geographical distances | Cost-distances | Processing tools | Reorder a matrix | Convert Euclidean distances into cost distances | From pairwise matrix to data frame | From data frame to pairwise matrix | Conclusion | References

Introduction | Data used in this vignette | Preliminary analyses: diagnostic plots | Distance of maximum correlation | IBD pattern as a scatter plot | Genetic graph construction | Pruning based on distance thresholds | Pruning based on topological constraints | Pruning based on the conditional independence principle | Genetic graph analysis | Computing graph-theoretic metrics | Graph partitioning | Visual analysis | Export to geopackage layers | Conclusion | References

Introduction | What is Graphab? | Data used in this vignette | Landscape graph construction | Project creation | Habitat creation | Link set creation | Graph construction | Landscape graph analysis | Metric calculation | Graph partitioning | Using landscape graphs in landscape genetic analyses | Computational performance | Conclusion | References

Introduction | Data used in this vignette | Comparing node metrics | Comparing graph links | Comparing graph modules | References